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Nextflow Graph Machine Learning Pipelines¶

Contents:

  • Exploratory Data Analysis
    • calculate_metrics()
    • construct_network()
    • log_results()
    • main()
    • visualize_graph()
  • Process Data
    • log_results()
    • main()
    • process_network()
  • To Graph Database
    • get_graph()
    • log_results()
    • main()
    • to_db()
  • Train a Graph Neural Network
    • SAGENet
    • get_graph()
    • get_model_components()
    • get_split()
    • log_results()
    • main()
    • train_model()
  • Train a Variational Autoencoder Graph Neural Network
    • VariationalGCNEncoder
    • get_graph()
    • get_model_components()
    • get_split()
    • log_results()
    • main()
    • train_model()
    • view_embeddings()

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