Nextflow Graph Machine Learning Pipelines

Contents:

• Exploratory Data Analysis
  • calculate_metrics()
  • construct_network()
  • log_results()
  • main()
  • visualize_graph()
• Process Data
  • log_results()
  • main()
  • process_network()
• To Graph Database
  • get_graph()
  • log_results()
  • main()
  • to_db()
• Train a Graph Neural Network
  • SAGENet
  • get_graph()
  • get_model_components()
  • get_split()
  • log_results()
  • main()
  • train_model()
• Train a Variational Autoencoder Graph Neural Network
  • VariationalGCNEncoder
  • get_graph()
  • get_model_components()
  • get_split()
  • log_results()
  • main()
  • train_model()
  • view_embeddings()